Difference between revisions of "Poland Lab Wiki"
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[[Reading List]] | [[Reading List]] | ||
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| + | [[Travel Instructions]] | ||
== Projects== | == Projects== | ||
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Lab protocols | Lab protocols | ||
| − | NGS Ordering | + | [[Media:GBS_NGS_Service_Order_Quebec.pdf|NGS Ordering]] |
| − | GBS Data Management | + | [[GBS Data Management]] |
== High-Throughput Phenotyping Procedures == | == High-Throughput Phenotyping Procedures == | ||
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[[UAS Phenotyping and Aerial Image Acquisition Procedure for DJI]] | [[UAS Phenotyping and Aerial Image Acquisition Procedure for DJI]] | ||
| − | + | [[Media:UAV_Data_Upload_SOP_v1.3.pdf|UAS Data Management Procedures]] | |
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| − | [[UAS Data Management Procedures]] | + | |
[[UAS HTP Data Analysis]] | [[UAS HTP Data Analysis]] | ||
| − | + | [[Media:CAMERAS_README.txt|Cameras README]] | |
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== Research Methods == | == Research Methods == | ||
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== Database == | == Database == | ||
| − | [[ | + | [[Connecting to the Database]] |
| − | [[Connecting to the Database with R]] | + | [[Media:Wheatgenetics_Quick_Start_Guide_ML_20171016.pdf|Wheatgenetics Database Quick Start Guide]] |
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| + | [[Media:DatabaseQueryFromR.pdf|Connecting to the Database with R]] | ||
[[Genotyping Database]] | [[Genotyping Database]] | ||
| − | [[High-Throughput Phenotyping Database]] | + | [[Land-based High-Throughput Phenotyping Database]] |
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| + | [[UAV High-Throughput Phenotyping Database]] | ||
[[Manual Phenotyping Database]] | [[Manual Phenotyping Database]] | ||
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[[CIMMYT Wheat Breeding Database]] | [[CIMMYT Wheat Breeding Database]] | ||
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| + | [[Media:CIMMYT_Automation_File_Interfaces.pdf|CIMMYT Database Import File Interface Specifications]] | ||
== Scripts == | == Scripts == | ||
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[[Media:zt200series_userguide.pdf|Zebra Printer User Manual]] | [[Media:zt200series_userguide.pdf|Zebra Printer User Manual]] | ||
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| + | == Guides == | ||
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| + | [[ How to Submit GBS Data to the NCBI Sequence Read Archive (SRA) ]] | ||
Latest revision as of 20:04, 13 May 2020
Welcome to the Poland Lab Wiki!
Contents
General Lab Information
Projects
Genotyping Procedures
Lab protocols
High-Throughput Phenotyping Procedures
UAS Phenotyping and Aerial Image Acquisition Procedures
UAS Phenotyping and Aerial Image Acquisition Procedure for DJI
UAS Data Management Procedures
Research Methods
Database
Wheatgenetics Database Quick Start Guide
Connecting to the Database with R
Land-based High-Throughput Phenotyping Database
UAV High-Throughput Phenotyping Database
CIMMYT Wheat Breeding Database
CIMMYT Database Import File Interface Specifications
Scripts
Tassel 5 GBS v2 Pipeline sample script for calling SNPs using reference genome
Equipment
The links below provide access to the user manuals for the Toshiba Stake Printer and the Zebra Label Printer.
If you encounter problems while using the printers please refer to the Troubleshooting section in the relevant user manual.
Toshiba Stake Printer User Manual
Guides
How to Submit GBS Data to the NCBI Sequence Read Archive (SRA)
