Difference between revisions of "Poland Lab Wiki"
(→Standard Operating Procedures) |
Altschuler (Talk | contribs) (→Database) |
||
| (109 intermediate revisions by 9 users not shown) | |||
| Line 1: | Line 1: | ||
<strong>Welcome to the Poland Lab Wiki!</strong> | <strong>Welcome to the Poland Lab Wiki!</strong> | ||
| − | == | + | == General Lab Information == |
| + | [[Lab Procedures]] | ||
| + | [[Reading List]] | ||
| − | == | + | [[Travel Instructions]] |
| − | [[ | + | |
| + | == Projects== | ||
| + | |||
| + | [[NSF BREAD]] | ||
| + | |||
| + | == Genotyping Procedures == | ||
| + | |||
| + | Lab protocols | ||
| + | |||
| + | [[Media:GBS_NGS_Service_Order_Quebec.pdf|NGS Ordering]] | ||
| + | |||
| + | [[GBS Data Management]] | ||
| + | |||
| + | == High-Throughput Phenotyping Procedures == | ||
[[UAS Phenotyping and Aerial Image Acquisition Procedures]] | [[UAS Phenotyping and Aerial Image Acquisition Procedures]] | ||
| + | |||
| + | [[UAS Phenotyping and Aerial Image Acquisition Procedure for DJI]] | ||
| + | |||
| + | [[Media:UAV_Data_Upload_SOP_v1.3.pdf|UAS Data Management Procedures]] | ||
| + | |||
| + | [[UAS HTP Data Analysis]] | ||
| + | |||
| + | [[Media:CAMERAS_README.txt|Cameras README]] | ||
| + | |||
| + | == Research Methods == | ||
| + | |||
| + | [[Genomic Selection]] | ||
| + | |||
| + | [[Meta-GWAS]] | ||
| + | |||
| + | == Database == | ||
| + | |||
| + | [[Connecting to the Database]] | ||
| + | |||
| + | [[Media:Wheatgenetics_Quick_Start_Guide_ML_20171016.pdf|Wheatgenetics Database Quick Start Guide]] | ||
| + | |||
| + | [[Media:DatabaseQueryFromR.pdf|Connecting to the Database with R]] | ||
| + | |||
| + | [[Genotyping Database]] | ||
| + | |||
| + | [[Land-based High-Throughput Phenotyping Database]] | ||
| + | |||
| + | [[UAV High-Throughput Phenotyping Database]] | ||
| + | |||
| + | [[Manual Phenotyping Database]] | ||
| + | |||
| + | [[Seed and Plant Database]] | ||
| + | |||
| + | [[CIMMYT Wheat Breeding Database]] | ||
| + | |||
| + | [[Media:CIMMYT_Automation_File_Interfaces.pdf|CIMMYT Database Import File Interface Specifications]] | ||
| + | |||
| + | == Scripts == | ||
| + | |||
| + | [[Tassel 5 GBS v2 Pipeline sample script for calling SNPs using reference genome]] | ||
| + | |||
| + | == Equipment == | ||
| + | |||
| + | The links below provide access to the user manuals for the Toshiba Stake Printer and the Zebra Label Printer. | ||
| + | |||
| + | If you encounter problems while using the printers please refer to the Troubleshooting section in the relevant user manual. | ||
| + | |||
| + | [[Media:B-SX5T-R_Owners-Manual_EN.pdf|Toshiba Stake Printer User Manual]] | ||
| + | |||
| + | [[Media:zt200series_userguide.pdf|Zebra Printer User Manual]] | ||
| + | |||
| + | == Guides == | ||
| + | |||
| + | [[ How to Submit GBS Data to the NCBI Sequence Read Archive (SRA) ]] | ||
Latest revision as of 20:04, 13 May 2020
Welcome to the Poland Lab Wiki!
Contents
General Lab Information
Projects
Genotyping Procedures
Lab protocols
High-Throughput Phenotyping Procedures
UAS Phenotyping and Aerial Image Acquisition Procedures
UAS Phenotyping and Aerial Image Acquisition Procedure for DJI
UAS Data Management Procedures
Research Methods
Database
Wheatgenetics Database Quick Start Guide
Connecting to the Database with R
Land-based High-Throughput Phenotyping Database
UAV High-Throughput Phenotyping Database
CIMMYT Wheat Breeding Database
CIMMYT Database Import File Interface Specifications
Scripts
Tassel 5 GBS v2 Pipeline sample script for calling SNPs using reference genome
Equipment
The links below provide access to the user manuals for the Toshiba Stake Printer and the Zebra Label Printer.
If you encounter problems while using the printers please refer to the Troubleshooting section in the relevant user manual.
Toshiba Stake Printer User Manual
Guides
How to Submit GBS Data to the NCBI Sequence Read Archive (SRA)
