Difference between revisions of "Poland Lab Wiki"

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<strong>Welcome to the Poland Lab Wiki!</strong>
 
<strong>Welcome to the Poland Lab Wiki!</strong>
  
== [Protocols] ==
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== General Lab Information ==
  
 +
[[Lab Procedures]]
  
 +
[[Reading List]]
  
== Standard Operating Procedures ==
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[[Travel Instructions]]
 +
 
 +
== Projects==
 +
 
 +
[[NSF BREAD]]
 +
 
 +
== Genotyping Procedures ==
 +
 
 +
Lab protocols
 +
 
 +
[[Media:GBS_NGS_Service_Order_Quebec.pdf|NGS Ordering]]
 +
 
 +
[[GBS Data Management]]
 +
 
 +
== High-Throughput Phenotyping Procedures ==
 +
 
 +
[[UAS Phenotyping and Aerial Image Acquisition Procedures]]
 +
 
 +
[[UAS Phenotyping and Aerial Image Acquisition Procedure for DJI]]
 +
 
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[[Media:UAV_Data_Upload_SOP_v1.3.pdf|UAS Data Management Procedures]]
 +
 
 +
[[UAS HTP Data Analysis]]
 +
 
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[[Media:CAMERAS_README.txt|Cameras README]]
 +
 
 +
== Research Methods ==
 +
 
 +
[[Genomic Selection]]
 +
 
 +
[[Meta-GWAS]]
 +
 
 +
== Database ==
 +
 
 +
[[Connecting to the Database]]
 +
 
 +
[[Media:Wheatgenetics_Quick_Start_Guide_ML_20171016.pdf|Wheatgenetics Database Quick Start Guide]]
 +
 
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[[Media:DatabaseQueryFromR.pdf|Connecting to the Database with R]]
 +
 
 +
[[Genotyping Database]]
 +
 
 +
[[Land-based High-Throughput Phenotyping Database]]
 +
 
 +
[[UAV High-Throughput Phenotyping Database]]
 +
 
 +
[[Manual Phenotyping Database]]
 +
 
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[[Seed and Plant Database]]
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[[CIMMYT Wheat Breeding Database]]
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[[Media:CIMMYT_Automation_File_Interfaces.pdf|CIMMYT Database Import File Interface Specifications]]
 +
 
 +
== Scripts ==
 +
 
 +
[[Tassel 5 GBS v2 Pipeline sample script for calling SNPs using reference genome]]
 +
 
 +
== Equipment ==
 +
 
 +
The links below provide access to the user manuals for the Toshiba Stake Printer and the Zebra Label Printer.
 +
 
 +
If you encounter problems while using the printers please refer to the Troubleshooting section in the relevant user manual.
 +
 
 +
[[Media:B-SX5T-R_Owners-Manual_EN.pdf|Toshiba Stake Printer User Manual]]
 +
 
 +
[[Media:zt200series_userguide.pdf|Zebra Printer User Manual]]
 +
 
 +
== Guides ==
 +
 
 +
[[ How to Submit GBS Data to the NCBI Sequence Read Archive (SRA) ]]

Latest revision as of 20:04, 13 May 2020

Welcome to the Poland Lab Wiki!

General Lab Information

Lab Procedures

Reading List

Travel Instructions

Projects

NSF BREAD

Genotyping Procedures

Lab protocols

NGS Ordering

GBS Data Management

High-Throughput Phenotyping Procedures

UAS Phenotyping and Aerial Image Acquisition Procedures

UAS Phenotyping and Aerial Image Acquisition Procedure for DJI

UAS Data Management Procedures

UAS HTP Data Analysis

Cameras README

Research Methods

Genomic Selection

Meta-GWAS

Database

Connecting to the Database

Wheatgenetics Database Quick Start Guide

Connecting to the Database with R

Genotyping Database

Land-based High-Throughput Phenotyping Database

UAV High-Throughput Phenotyping Database

Manual Phenotyping Database

Seed and Plant Database

CIMMYT Wheat Breeding Database

CIMMYT Database Import File Interface Specifications

Scripts

Tassel 5 GBS v2 Pipeline sample script for calling SNPs using reference genome

Equipment

The links below provide access to the user manuals for the Toshiba Stake Printer and the Zebra Label Printer.

If you encounter problems while using the printers please refer to the Troubleshooting section in the relevant user manual.

Toshiba Stake Printer User Manual

Zebra Printer User Manual

Guides

How to Submit GBS Data to the NCBI Sequence Read Archive (SRA)