Difference between revisions of "How to Submit GBS Data to the NCBI Sequence Read Archive (SRA)"

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(Created page with "How to Submit GBS Data to the NCBI Sequence Read Archive (SRA) There are three steps in submitting sequence data to the NCBI Sequence Read Archive (SRA): Create a BioProject...")
 
(Create a BioProject)
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Create a BioProject submission.
 
Create a BioProject submission.
 
Create a BioSample submission.
 
Create a BioSample submission.
 +
Create a Sequence Read Archive submission.
 +
 +
There are three steps in submitting sequence data to the NCBI Sequence Read Archive (SRA):
 +
 +
Create a BioProject submission.
 +
 +
Create a BioSample submission.
 +
 
Create a Sequence Read Archive submission.
 
Create a Sequence Read Archive submission.
  
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Login to the NCBI Submission Portal: https://submit.ncbi.nlm.nih.gov/subs/bioproject/ and click on New Submission. Then fill out the following sections. After each section, click “Continue” to move on to the next section:
 
Login to the NCBI Submission Portal: https://submit.ncbi.nlm.nih.gov/subs/bioproject/ and click on New Submission. Then fill out the following sections. After each section, click “Continue” to move on to the next section:
  
1. Submitter
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<ol>
2. Project Type
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<li>Submitter</li>
 +
<li>Project Type</li>
 
* Project data type: Check “Phenotype or Genotype.”
 
* Project data type: Check “Phenotype or Genotype.”
    * Sample scope: “Select Multiisolate.”
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* Sample scope: “Select Multiisolate.”
3. Target
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<li>Target</li>
    * Organism name: e.g. Triticum aestivum
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* Organism name: e.g. Triticum aestivum
4. General Info
+
<li>General Info</li>
    * Release date: Choose either “Release immediately following processing” or “Release on specified date or upon publication, whichever is first” and enter a Projected release date.
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* Release date: Choose either “Release immediately following processing” or “Release on specified date or upon publication, whichever is first” and enter a Projected release date.
    * Project title: Enter a title of your choosing.
+
* Project title: Enter a title of your choosing.
    * Public description: Provide a paragraph of the study goals and relevance.
+
* Public description: Provide a paragraph of the study goals and relevance.
    * Is your project part of a larger initiative which is already registered with NCBI? Select Yes or No. If yes, enter the "Initiative description" and the "BioProject accession" of the larger initiative to which this project belongs.
+
* Is your project part of a larger initiative which is already registered with NCBI? Select Yes or No. If yes, enter the "Initiative description" and the "BioProject accession" of the larger initiative to which this project belongs.
5. BioSample
+
<li>BioSample</li>
    * Click on “Continue.” You will be able to create a BioSample after you finish creating this BioProject.
+
* Click on “Continue.” You will be able to create a BioSample after you finish creating this BioProject.
6. Publications
+
<li>Publications</li>
    * Enter a PubMed ID or DOI if available.
+
* Enter a PubMed ID or DOI if available.
7. Review & Submit
+
<li>Review & Submit</li>
    * Review all the information and click “Submit” if everything looks ok. If anything looks wrong, you can go back to any section by clicking on its respective tab at the top.
+
* Review all the information and click “Submit” if everything looks ok. If anything looks wrong, you can go back to any section by clicking on its respective tab at the top.
 
+
</ol>
## Create BioSample
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== Create BioSample ==
## Create Sequence Read Archive Submission
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== Create Sequence Read Archive Submission ==

Revision as of 16:05, 19 September 2019

How to Submit GBS Data to the NCBI Sequence Read Archive (SRA)

There are three steps in submitting sequence data to the NCBI Sequence Read Archive (SRA):

Create a BioProject submission. Create a BioSample submission. Create a Sequence Read Archive submission.

There are three steps in submitting sequence data to the NCBI Sequence Read Archive (SRA):

Create a BioProject submission.

Create a BioSample submission.

Create a Sequence Read Archive submission.

Create a BioProject

Login to the NCBI Submission Portal: https://submit.ncbi.nlm.nih.gov/subs/bioproject/ and click on New Submission. Then fill out the following sections. After each section, click “Continue” to move on to the next section:

  1. Submitter
  2. Project Type
    • Project data type: Check “Phenotype or Genotype.”
    • Sample scope: “Select Multiisolate.”
  3. Target
    • Organism name: e.g. Triticum aestivum
  4. General Info
    • Release date: Choose either “Release immediately following processing” or “Release on specified date or upon publication, whichever is first” and enter a Projected release date.
    • Project title: Enter a title of your choosing.
    • Public description: Provide a paragraph of the study goals and relevance.
    • Is your project part of a larger initiative which is already registered with NCBI? Select Yes or No. If yes, enter the "Initiative description" and the "BioProject accession" of the larger initiative to which this project belongs.
  5. BioSample
    • Click on “Continue.” You will be able to create a BioSample after you finish creating this BioProject.
  6. Publications
    • Enter a PubMed ID or DOI if available.
  7. Review & Submit
    • Review all the information and click “Submit” if everything looks ok. If anything looks wrong, you can go back to any section by clicking on its respective tab at the top.

Create BioSample

Create Sequence Read Archive Submission